Refereed journal articles:

Lendino A, Castellanos AC, Pigott DM, Han BA. A review of emerging health threats from zoonotic New World arenaviruses. BMC Microbiology, 24:115.

Dahlin K, O'Regan, Han BA, Schmidt JP, Drake JM. 2024. Impacts of host availability and temperature on mosquito-borne parasite transmission. Ecological Monographs, 94:31603.

Sundaram, M., Dorado, M., Akaribo, B., Filion, A., Han, B.A., Gottdenker, N.L., Schmidt, J.P., Drake, J.M. and Stephens, P.R. 2024. Fruit–frugivore dependencies are important in Ebolavirus outbreaks in Sub-Saharan Africa. Ecography, Early view.

Han BA, Varshney KR, LaDeau S, Subramaniam A, Weathers KC, Zwart J. 2023. A synergistic future for AI and ecology . Proceedings of the National Academy of Sciences of the United States of America. doi.org/10.1073/pnas.2220283120

Rosi EJ, Fick JB, Han BA. 2023. Are Animal Disease Reservoirs at Risk of Human Antiviral Exposure? Environmental Science and Technology Letters. doi.org/10.1021/acs.estlett.3c00201

Faust C, Castellanos AA, Peel A, Eby P, Plowright R, Han BA, Bharti N. 2023. Environmental variation across disparate spatial scales and temporal lags influences Hendra virus spillover. J. Applied Ecology. doi.org/10.1111/1365-2664.14415

Vadmal G, Glidden C, Han BA, Carvalho B, Castellanos A, Mordecai E. 2023. Data-driven predictions of potential Leishmania vectors in Latin America. PLoS Neglected Tropical Diseases. doi.org/10.1371/journal.pntd.0010749

Sundaram M, Schmidt JP, Han BA, Drake JM, Stephens PR. 2022. Traits, phylogeny and host cell receptors predict ebolavirus host status among African mammals. PLoS Neglected Tropical Diseases, doi:10.1371/journal.pntd.0010993.

Ecke F, Han BA, Hörnfeldt B, Khalil H, Magnusson M, Singh N, and Ostfeld R. 2022. Population fluctuations and synanthropy explain transmission risk in rodent-borne zoonoses. Nature Communications. DOI:10.1038/s41467-022-35273-7

Becker DJ, Albery GF, Sjodin AR, Poisot T, Bergner LM, Chen B, Cohen LE, Dallas TA, Eskew EA, Fagre AC, Farrell MJ, Gush S, Han BA, Simmons NB, Stock M, Teeling EC, Carlson CJ. 2022. Optimising predictive models to prioritise viral discovery in zoonotic reservoirs. The Lancet Microbe. DOI:10.1016/S2666-5247(21)00245-7

Espira LM, Brouwer AF, Han BA, Foufopoulos J, Eisenberg JNS. 2021. Dilution of epidemic potential of environmentally transmitted infectious diseases for species with partially overlapping habitats. American Naturalist, E000–E000. doi:10.1086/717413

Celone M, Okech B, Han BA, Forshey BM, Anyamba A, Dunford J, et al. 2021. A systematic review and meta-analysis of the potential non-human animal reservoirs and arthropod vectors of the Mayaro virus. PLoS Negl Trop Dis. 15: e0010016. doi:10.1371/journal.pntd.0010016

Fischhoff IR, Castellanos AA, Rodrigues J, Varsani A, Han BA. 2021. Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2. Proceedings of the Royal Society B, DOI:https://doi.org/10.1098/rspb.2021.1651

Wadhawan K, Das P, Han BA, Fischhoff IR, Castellanos AC, Varsani A, Varshney KR. 2021. Towards interpreting zoonotic potential of betacoronavirus sequences with attention. ICLR 2021 Workshop Machine learning for preventing and combating pandemics. arXiv:2108.08077 [q-bio.QM]

Han BA, Castellanos AA, Schmidt JP, Fischhoff IR, Drake JM. 2021. The ecology of zoonotic parasites in the Carnivora. Trends in Parasitology. DOI: 10.1016/j.pt.2021.08.006

Majewska AA, Huang T, Han BA, Drake JM. 2021. Predictors of zoonotic potential in helminths. Philos Trans R Soc Lond B Biol Sci. 376: 20200356. doi:10.1098/rstb.2020.0356

Carlson CJ, Farrell MJ, Grange Z, Han BA, Mollentze N, Phelan AL, et al. 2021. The future of zoonotic risk prediction. Philos Trans R Soc Lond B Biol Sci. 376: 20200358. doi:10.1098/rstb.2020.0358.

Becker DJ and Han BA. 2021. The macroecology and evolution of avian competence for Borrelia burgdorderi. Global Ecology and Biogeography.

Wells HL, Letko M, Ssebide B, Byarugaba D, Navarrete-Macias I, Liang E, Cranfield M, Han BA, Tingley M, Diuk-Wasser M, Goldstein T, Johnson CK, Mazet J, Munster V, Gilardi K, Anthony S. 2021. The evolutionary history of ACE2 usage within the subgenus Sarbecovirus. Virus Evolution.

Sacchetto L, Drumond BP, Han BA, Nogueira ML, Vasilakis, N. 2020. Re-emergence of yellow fever in the neotropics – quo vadis? Emerging Topics Life Sciences. 4 (4): 411–422.

Han BA, O’Regan SM, Schmidt JP, Drake JM. 2020. Integrating data mining and transmission theory for the ecology of infectious diseases. Ecology Letters, 23(8):1178

Fischhoff I, Huang T, Hamilton S, Han BA, Ladeau S, Ostfeld RS, Emma R, Solomon C. 2020. Parasite and pathogen effects on ecosystem processes: a quantitative review. Ecosphere, 11(5): e03057.

Plowright RK, Becker DJ, Crowley DE, Washburne AD, Huang T, Han BA. 2019. Nipah virus outbreak in Kerala, India: Identifying reservoirs to prioritize surveillance. PLoS Neglected Tropical Diseases, 13(6): e0007393.

Schmidt JP, Maher S, Drake JM, Huang T, Farrell MJ, Han BA. 2019. Ecological indicators of mammal exposure to Ebolavirus. Philosophical Transactions of the Royal Society B. 374:20180337.

Berger KM, Wood JLN, Jenkins B, Olsen J, Morse SS, Gresham L, Root JJ, Rush M, Pigott D, Winkleman T, Gillespie TR, Nuzzo J, Han BA, Olinger P, Karesh WB, Mills JN, Annelli JF, Barnabei J, Lucey D, Hayman DTS. 2019. Policy and science for global health security: shaping the course of international health. Special issue: One Health and Zoonoses, Tropical Medicine and Infectious Diseases 4(2): 60.

Han BA, Majumdar S, Calmon FD, Horesh R, Kumar A, Perer A, von Marschall EB, Wei D, Mojsilovic A, Varshney K. 2019. Confronting data sparsity to identify potential sources of Zika virus infection among primates. Epidemics, 27:59-65. [PDF]

Han BA, Ostfeld RS. 2019. Topic modeling of major research themes in disease ecology of mammals. Journal of Mammalogy, 100:1008.

Downs C, Schoenle L, Han BA, Harrison J, Martin M. 2019. The scaling of host competence. Trends in Parasitology, 35:182.

Stephens PR, Altizer S, Gittleman JL, Moan E, Han BA, Pappalardo P. 2019. Parasite sharing in wild ungulates and their predators: effects of phylogeny, range overlap, and trophic links. Journal of Animal Ecology, 19:1159. [PDF]

Dallas TA, Han BA, Nunn CL, Park AW, Stephens PR, Drake JM. 2019. Host traits associated with species roles in parasite sharing networks. Oikos 28:23.

Almeida RM, Han BA, Reisinger AJ, Kagemann C, Rosi EJ. 2018. High mortality in aquatic predators of mosquito larvae caused by exposure to insect repellent. Biology Letters 14, 20180526.

Dallas TA, Aguirre AA, Budischak S, Carlson C, Ezenwa V, Han BA, Huang S, Stephens PR. 2018. Gauging support for macroecological patterns in helminth parasites. Global Ecology and Biogeography 27, 1437–1447.

Walker JW, Han BA, Ott IM and Drake JM. 2018. Transmissibility of emerging viral zoonoses. PLoS ONE. 13, e0206926.

Strona G, Carstens CJ, Beck PSA, Han BA. 2018. The intrinsic vulnerability of networks to epidemics. Ecological Modelling 383:91–97. doi:10.1016/j.ecolmodel.2018.05.013

Yang LH, Han BA. 2018. Data-driven predictions and novel hypotheses about zoonotic tick vectors from the genus Ixodes. BMC Ecology, 18:1-7.

[PDF] [DATA]

Blaustein AR, Urbina J, Snyder PW, Reynolds E, Dang T, Hoverman JT, Han BA, Olson DH, Searle C, Hambalek NH. 2018. The effects of emerging infectious diseases on amphibians: a review of experimental studies. Diversity 10, 81.

LaDeau SL, Han BA, Rosi-Marshall EJ, Weathers KC. 2017. The next decade of big data in ecosystem science. Ecosystems. 20:274–83.

Evans, M., Dallas, T.A., Han BA, Murdock, C.C., Drake, J.M. Data-driven identification of potential Zika virus vectors. 2017. eLife. DOI: http://dx.doi.org/10.7554/eLife.22053

Schmidt JP, Park AW, Kramer A, Han BA, Alexander LA, Drake JD. 2017 . Spatiotemporal fluctuations and triggers of Ebola virus spillover. Emerging Infectious Diseases. DOI: 10.3201/eid2303.160101.

[Link to animated Visualization]

Han BA, Yang, L. 2016. Predicting novel tick vectors of zoonotic disease. Proceedings of the 33rd International Conference on Machine Learning. #Data4Good: Machine Learning in Social Good Applications, New York, NY, USA. arXiv:1606.06323v1 [q-bio.PE]

Ilin, R., Han, B.A. Formal Concept Analysis of Rodent Carriers of Zoonotic Disease. 2016. Proceedings of the 33rd International Conference on Machine Learning. #Data4Good: Machine Learning in Social Good Applications, New York, NY, USA. arXiv:1608.07241 [stat.ML]

Pigott DM, Millear A, Earl L, Morozoff C, Han BA, Shearer FM, Weiss DJ, Brady OJ, Kraemer MUG, Moyes CL, Bhatt S, Gething PW, Golding N, Hay SI. 2016. Updates to the zoonotic niche map of Ebola virus disease in Africa. eLife, 5:e16412

Han BA, Schmidt JP, Hayman DTS, Alexander LA, Bowden SA, Drake JM. 2016. Undiscovered bat hosts of filoviruses. PLoS Neglected Tropical Diseases, 10(7): e0004815.

[Data]

[Press: Digital Trends, Scientific Computing, ScienceDaily, Infection Control Today, Foreign Affairs New Zealand]

Stephens, P.R., Altizer, S.M., Smith, K.F., Aguirre, A., Brown, J.H., Budischak, S., Byers, J.E., Critchlow, R., Davies, J.T., Drake, J.M., Ezenwa, V., Farrell, M., Gittleman, J.L., Han, B.A., Huang, S., Hutchinson, R.A., Johnson, P.T.J., Nunn, C.L., Onstad, D., Park, A.P., Poulin, R., Vazquez-Prokopec, G.M., Papparlardo, P.,Schmidt, J.P. 2016. The macroecology of infectious diseases: a new perspective on global-scale drivers of pathogen distributions and impacts. Ecology Letters, 19:1159.

Publications

Refereed journal articles:

[Link to animated Visualization]

[Data]

[Press: Digital Trends, Scientific Computing, ScienceDaily, Infection Control Today, Foreign Affairs New Zealand]

[PDF]

[Press: BBC World Report, The washington Post, The Scientist, The Science Explorer, Conservation magazine, SINC, El País, TakePart, Cell Press Podcast, WAMC Northeast public radio, Popular Science, Health Medicine Network, Tech Times, MSN Noticias, FiercePharma, Eurek Alert, Le Scienze]

[Press: Science, Nature, The Economist, IEEE Spectrum, The Scientist, Fusion, Healio, Homeland Security News Wire, Popular Science, Infection Control Today, Laboratory Equipment, News Medical, OnlineAthens, Poughkeepsie Journal, RT, Ars Technica, National Geographic, PHYS ]

[Press: Faculty of 1000, LiveScience, ScienceDaily, Scientific American, TIME Magazine, US News & World Report]

[Press: Conservation Magazine, Grist, Mongabay]

Other publications: